PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054803.90
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 97aa    MW: 11029.6 Da    PI: 10.5812
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054803.90genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-322684259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                   D+y+WrKYGqK++kgs+fpr+YYrC+s  gCp++k+ver+++dp+++++tYegeH+h+
  EcC054803.90 26 ADQYTWRKYGQKPIKGSPFPRGYYRCSSVrGCPARKHVERAQDDPRLLVVTYEGEHRHS 84
                  6**************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.9E-10222IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.9E-331085IPR003657WRKY domain
PROSITE profilePS5081130.942086IPR003657WRKY domain
SuperFamilySSF1182909.94E-282085IPR003657WRKY domain
SMARTSM007744.9E-372585IPR003657WRKY domain
PfamPF031061.1E-272783IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006306Biological ProcessDNA methylation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006401Biological ProcessRNA catabolic process
GO:0030150Biological Processprotein import into mitochondrial matrix
GO:0030422Biological Processproduction of siRNA involved in RNA interference
GO:0050776Biological Processregulation of immune response
GO:0050832Biological Processdefense response to fungus
GO:0055114Biological Processoxidation-reduction process
GO:0000418Cellular ComponentDNA-directed RNA polymerase IV complex
GO:0000419Cellular ComponentDNA-directed RNA polymerase V complex
GO:0005720Cellular Componentnuclear heterochromatin
GO:0005742Cellular Componentmitochondrial outer membrane translocase complex
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003724Molecular FunctionRNA helicase activity
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0004518Molecular Functionnuclease activity
GO:0005506Molecular Functioniron ion binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0009055Molecular Functionelectron carrier activity
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
AGRCHCSKKK KHRVKRVVRV AAETAADQYT WRKYGQKPIK GSPFPRGYYR CSSVRGCPAR  60
KHVERAQDDP RLLVVTYEGE HRHSVSNAIS YGSMPDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-221385273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046902.18e-67PREDICTED: WRKY transcription factor WRKY51
SwissprotQ0JEE23e-42WRK51_ORYSJ; WRKY transcription factor WRKY51
TrEMBLA0A059CKC02e-65A0A059CKC0_EUCGR; Uncharacterized protein
STRINGXP_010046902.13e-66(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-35WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Xie Z, et al.
    Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.
    Plant J., 2006. 46(2): p. 231-42
    [PMID:16623886]
  5. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  6. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  7. Hwang SH, et al.
    OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.
    Plant Cell Rep., 2016. 35(9): p. 1975-85
    [PMID:27300023]