PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054811.230
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 180aa    MW: 20463.4 Da    PI: 6.6696
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054811.230genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.4e-1061148181
                    EEEE-..-HHHHT.T-EE--H.HH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
             B3   1 ffkvltpsdvlks.grlvlpk.kfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                    f+k+lt+sd     +rl + k +fa+++      + + e ++ ++  ++ g+ + ++++++ ++ ++v+t+GW+ Fvk+n+L++ D+v 
  EcC054811.230  61 FEKQLTTSDIIGIqSRLLVNKtDFATSIlpllekDDDIEVGIPVKAFNPAGKAYPMTFKIWCGR-SHVITSGWNLFVKDNRLEVSDIVR 148
                    889999999876644555554156777799998844445567789999**********766554.69*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-1460155IPR015300DNA-binding pseudobarrel domain
CDDcd100173.57E-1361164No hitNo description
SMARTSM010190.004361168IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-1361164IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.543108168IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006108Biological Processmalate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006396Biological ProcessRNA processing
GO:0006486Biological Processprotein glycosylation
GO:0015074Biological ProcessDNA integration
GO:0055085Biological Processtransmembrane transport
GO:0055114Biological Processoxidation-reduction process
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0004471Molecular Functionmalate dehydrogenase (decarboxylating) (NAD+) activity
GO:0004576Molecular Functionoligosaccharyl transferase activity
GO:0004616Molecular Functionphosphogluconate dehydrogenase (decarboxylating) activity
GO:0005506Molecular Functioniron ion binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0008270Molecular Functionzinc ion binding
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MELKNEQGVR PMQQHRQSKT IQASSCPSRP QHDPQHSATG LHLVRIVDTL IDSIGDCSEP  60
FEKQLTTSDI IGIQSRLLVN KTDFATSILP LLEKDDDIEV GIPVKAFNPA GKAYPMTFKI  120
WCGRSHVITS GWNLFVKDNR LEVSDIVRVW AFRDVWTREL CLLISSRKPE VQQPIEKEET
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050479.11e-128PREDICTED: putative B3 domain-containing protein At4g03160
TrEMBLA0A059CMH91e-126A0A059CMH9_EUCGR; Uncharacterized protein
STRINGXP_010050479.11e-127(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.17e-22B3 family protein