PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054812.210
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 187aa    MW: 21252.5 Da    PI: 9.1535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054812.210genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-091566555
                   HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
            HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                    + +E++RR ++N   ++L +l+P+    ++s   ls  + L +A+ YIk+L+
  EcC054812.210 15 RKTIEKNRRIHMNILCSKLVSLIPQhH-VTTSLDlLSRQDQLDQATSYIKQLK 66
                   5789*********************65.5666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.6141065IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-101379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-101381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-61565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.54E-51869No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0006508Biological Processproteolysis
GO:0015937Biological Processcoenzyme A biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003968Molecular FunctionRNA-directed RNA polymerase activity
GO:0004594Molecular Functionpantothenate kinase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008233Molecular Functionpeptidase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MNKSTSNNQS PKVERKTIEK NRRIHMNILC SKLVSLIPQH HVTTSLDLLS RQDQLDQATS  60
YIKQLKERID GLKLRKDQAV LKSEGIDTSS SLTSSIDQEA NLGFMLPVFQ LRDHGLGLEV  120
ILISGRRKNF MLYEVISILE EEGAEVVSAS FSVVGDKIFH TLHAQVRLCR IGVETTRVYE  180
RLKELIH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039147.11e-133PREDICTED: transcription factor bHLH100
TrEMBLA0A059A7G51e-131A0A059A7G5_EUCGR; Uncharacterized protein
STRINGXP_010039147.11e-132(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-22bHLH family protein