PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054812.220
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 160aa    MW: 17934.6 Da    PI: 9.5866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054812.220genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-111361355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   +    +E++RR ++N   ++L +l+P+     +   sK + L +A  YIk+L+
  EcC054812.220 13 VERRTMEKNRRIHMNILCSKLASLIPQH----DVTTSKQDQLDQAASYIKQLK 61
                   556789*********************8....899****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.8011060IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-111273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-121275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.98E-71264No hitNo description
PfamPF000101.3E-71460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-41666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0006508Biological Processproteolysis
GO:0015937Biological Processcoenzyme A biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003968Molecular FunctionRNA-directed RNA polymerase activity
GO:0004594Molecular Functionpantothenate kinase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008233Molecular Functionpeptidase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MKKSTSSNQS PRVERRTMEK NRRIHMNILC SKLASLIPQH DVTTSKQDQL DQAASYIKQL  60
KERIDGLKLR KDQAVLQSGG IDTSSSLTSS IDQEAKLGFV LPVFQLRDHG LGLEVILISG  120
RRKNFMLYEV INILEEEGAE VVSASFSVVG DKIFHTLHAQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720224.11e-110PREDICTED: transcription factor ORG2-like
TrEMBLA0A059A7G51e-100A0A059A7G5_EUCGR; Uncharacterized protein
STRINGXP_010039147.11e-101(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-25bHLH family protein