PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054817.180
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 247aa    MW: 26880.9 Da    PI: 7.3424
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054817.180genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.49.3e-1926123282
       trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                    W  +e++ Liea++ ++er  +++                   +p+W++v +++++rg+ rs++qC++kw+nl ++ykk++e e++rt e+++  +
  EcC054817.180  26 WNVNETMILIEAKKMDDERRTKRSeesgegvgggagrggakPSEPRWKWVEDYCWRRGCYRSQNQCNDKWDNLMRDYKKVREYERRRTGEEEEAAS 121
                    99***********977766665434667778888888887799*******************************************9877775555 PP

       trihelix  81 yf 82 
                    y+
  EcC054817.180 122 YW 123
                    54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.471899IPR017877Myb-like domain
PfamPF138373.5E-1425123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006075Biological Process(1->3)-beta-D-glucan biosynthetic process
GO:0006629Biological Processlipid metabolic process
GO:0007034Biological Processvacuolar transport
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branch
GO:0015074Biological ProcessDNA integration
GO:0000148Cellular Component1,3-beta-D-glucan synthase complex
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003843Molecular Function1,3-beta-D-glucan synthase activity
GO:0004751Molecular Functionribose-5-phosphate isomerase activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MADQSGGGGG GGGNNAMMRD YRKGNWNVNE TMILIEAKKM DDERRTKRSE ESGEGVGGGA  60
GRGGAKPSEP RWKWVEDYCW RRGCYRSQNQ CNDKWDNLMR DYKKVREYER RRTGEEEEAA  120
SYWKIEKSER KERNLPTNMM PQIYEALVDV VERRAGGGAG GAGGAGGSQR ATAAASASIT  180
AYSIGHPNPD VIVSTGYVVE TPIQPPLPPQ QHVLPDPIVP ALPPPSQTPE APPQLPSAAA  240
SQPFPSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054505.11e-118PREDICTED: uncharacterized protein LOC104442814
TrEMBLA0A059CEJ01e-117A0A059CEJ0_EUCGR; Uncharacterized protein
STRINGXP_010054505.11e-118(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-49Trihelix family protein