PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054819.200
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 522aa    MW: 56355 Da    PI: 5.9885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054819.200genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10340387455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i  ++  L++l+P++    +k   Ka++L + ++Y++sLq
  EcC054819.200 340 SHSLAERVRREKISLRMKALQDLVPNC----NKVTGKAMMLDEIINYVQSLQ 387
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.41E-11334391No hitNo description
SuperFamilySSF474593.93E-17334405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-18336404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.815336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7340387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006265Biological ProcessDNA topological change
GO:0006457Biological Processprotein folding
GO:0006468Biological Processprotein phosphorylation
GO:0006595Biological Processpolyamine metabolic process
GO:0006886Biological Processintracellular protein transport
GO:0007165Biological Processsignal transduction
GO:0015074Biological ProcessDNA integration
GO:0016117Biological Processcarotenoid biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003918Molecular FunctionDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0004190Molecular Functionaspartic-type endopeptidase activity
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0008536Molecular FunctionRan GTPase binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0043531Molecular FunctionADP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEGSSTPLTQ NSSTFGIGIH PNDQLPNCFL VTGWEDSLDQ GDPFESALSS IVSSPVAPHA  60
GEGEAGMIRE LIGRLGSICD SGQASPGSYN HSTTNTPRYN TPLNSPPKLS LSMADQLAHG  120
GFQAPSSHFP GHPSFMPVMA DPGFAERAAR FSCFGPRNVN AANLNGGLGL NASEFLGKQA  180
NKLDSGRFCR VPSSQSLRAN VGSQICAQGN ERSFLQPGVS TSTPENGEMG ESREGSSISE  240
QVTHGEMRAN GQIDVNSRKR KAILKAKARN SAVSPQSAKD SEVPMENEEP ITKKIKPAET  300
DGNEKDAAQG DQKQSKENSK PEPQKDYIHV RARRGQATDS HSLAERVRRE KISLRMKALQ  360
DLVPNCNKVT GKAMMLDEII NYVQSLQRQV ELLSMKLSTL NPTVDFNLEA FLSKDILHPQ  420
GPLPNSLYPV DSSGSMLYSY QPPQGLMPMP SVVSSNMDAQ FPVNFLNSGI HRDASLNLPL  480
CVDNYGEASA PAPALWEDDL QSVVQMGLGQ NEPQRVEQGT RI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023592.10.0PREDICTED: transcription factor bHLH62
TrEMBLA0A059B1040.0A0A059B104_EUCGR; Uncharacterized protein
STRINGXP_010023592.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-58bHLH family protein