PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054820.260
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 193aa    MW: 22162 Da    PI: 7.0204
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054820.260genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-183282656
                   S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   ++ ++q++ Le+ F+++++++ +++ +LA++lg++ rqV +W+qNrRa+++
  EcC054820.260 32 RLAPDQVRLLERSFASHKKLDPDRKLQLAAELGVPPRQVAIWYQNRRARWR 82
                   5789**********************************************9 PP
2HD-ZIP_I/II109.91.8e-3529120293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    + +rl+ +qv+lLE+sF +++kL+p+rK +la eLg+ prqva+W+qnrRAR++t+ lE d+ aLk ++d   +e+++Le+ev++Lr+el++
  EcC054820.260  29 RTKRLAPDQVRLLERSFASHKKLDPDRKLQLAAELGVPPRQVAIWYQNRRARWRTQTLELDCGALKLELDDALAERRKLEQEVASLRQELER 120
                    679*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.9532484IPR001356Homeobox domain
SuperFamilySSF466893.38E-182591IPR009057Homeodomain-like
SMARTSM003891.3E-192588IPR001356Homeobox domain
CDDcd000862.92E-162684No hitNo description
PfamPF000466.6E-163282IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-193287IPR009057Homeodomain-like
PRINTSPR000312.1E-55564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000312.1E-56480IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006108Biological Processmalate metabolic process
GO:0006412Biological Processtranslation
GO:0006508Biological Processproteolysis
GO:0006520Biological Processcellular amino acid metabolic process
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0008033Biological ProcesstRNA processing
GO:0015074Biological ProcessDNA integration
GO:0031936Biological Processnegative regulation of chromatin silencing
GO:0055085Biological Processtransmembrane transport
GO:0055114Biological Processoxidation-reduction process
GO:0080111Biological ProcessDNA demethylation
GO:0005840Cellular Componentribosome
GO:0009506Cellular Componentplasmodesma
GO:0016021Cellular Componentintegral component of membrane
GO:0003682Molecular Functionchromatin binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0005509Molecular Functioncalcium ion binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0008270Molecular Functionzinc ion binding
GO:0008483Molecular Functiontransaminase activity
GO:0030060Molecular FunctionL-malate dehydrogenase activity
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEFFHAQHPH PKPKPKQQQP SLSPSKRVRT KRLAPDQVRL LERSFASHKK LDPDRKLQLA  60
AELGVPPRQV AIWYQNRRAR WRTQTLELDC GALKLELDDA LAERRKLEQE VASLRQELER  120
AWEMLDTACG KGQNHREGSN GAAPEVPTSR LCNEGEVNWC QWDDGNKVLP MEDGDDDDLY  180
ACWMLTNGGS RLD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060628.11e-138PREDICTED: homeobox-leucine zipper protein ATHB-52-like
STRINGXP_010060628.11e-137(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-26homeobox protein 52