PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054851.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 266aa    MW: 29923.6 Da    PI: 4.6521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054851.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20133184155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++y+GVr+++ +g+++Ae rdp++ng  +r++lg++ t+e+Aa a+++a+ k++g
  EcC054851.20 133 THYRGVRRRP-WGKYAAEMRDPKKNG--ARVWLGTYETPEDAALAYDQAAFKMRG 184
                   68********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.50E-30133194No hitNo description
PfamPF008472.8E-15133184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-31134193IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22134193IPR016177DNA-binding domain
SMARTSM003801.1E-37134198IPR001471AP2/ERF domain
PROSITE profilePS5103223.525134192IPR001471AP2/ERF domain
PRINTSPR003673.7E-10135146IPR001471AP2/ERF domain
PRINTSPR003673.7E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0010099Biological Processregulation of photomorphogenesis
GO:0042545Biological Processcell wall modification
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048512Biological Processcircadian behavior
GO:0055114Biological Processoxidation-reduction process
GO:0080167Biological Processresponse to karrikin
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0030599Molecular Functionpectinesterase activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLQEIFGPFE TDPCDALKSI CQHLLEEDDD DDAVNAAFST QTPANICRRC SSFSNLLLLE  60
SWSELPLKVD DSEDMVVYSA LRDALNSGWT VPLASSQELD FEVTTIDYNS VGLATEEKQE  120
TVEREVQVPV KKTHYRGVRR RPWGKYAAEM RDPKKNGARV WLGTYETPED AALAYDQAAF  180
KMRGCKAKLN FPHLIGSTDY EPIRVSLKRR SAEPSSPSTS SGESFLTGTK MRKREVNVDA  240
KVDFQSPIPF HILDVGLLSV DEQFLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-31131197268ATERF1
3gcc_A1e-31131197268ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732518.11e-150PREDICTED: ethylene-responsive transcription factor 13
TrEMBLA0A059B9S41e-133A0A059B9S4_EUCGR; Uncharacterized protein
STRINGXP_010067932.11e-165(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.19e-53ethylene-responsive element binding factor 13