PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054864.90
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 211aa    MW: 22420.9 Da    PI: 9.7598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054864.90genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.4e-141864354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  ++h+++E+rRRdriN  +++Lr+l+Pk+     +K++Ka+ L  +++++k+L
  EcC054864.90 18 KSHSQAEKRRRDRINAQLATLRKLIPKS-----EKMDKAALLASVIDHVKDL 64
                  68*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2561564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-151883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-141885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-111864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-112170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-82367No hitNo description
Gene3DG3DSA:3.30.70.2609.5E-5107154No hitNo description
CDDcd048731.87E-5108144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000413Biological Processprotein peptidyl-prolyl isomerization
GO:0006457Biological Processprotein folding
GO:0006468Biological Processprotein phosphorylation
GO:0006886Biological Processintracellular protein transport
GO:0006897Biological Processendocytosis
GO:0005774Cellular Componentvacuolar membrane
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0019867Cellular Componentouter membrane
GO:0003677Molecular FunctionDNA binding
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0046983Molecular Functionprotein dimerization activity
GO:0070569Molecular Functionuridylyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
DRATCASASA SASASVSKSH SQAEKRRRDR INAQLATLRK LIPKSEKMDK AALLASVIDH  60
VKDLKRKASE ISKSITILPS EVDEVTIDCE DPELNKGGND SGAVLIRVSI CCDDRPELLS  120
ELTRVIKGLK LTTVKADVAS VGGRIKSVLI LCGDTTDGGG GGGDRGACLS SLKQSLKVVV  180
SRIACSSMAA SNCRIRSKRQ RFFLPCQSPL P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031188.11e-115PREDICTED: transcription factor bHLH51
TrEMBLA0A059AAS91e-114A0A059AAS9_EUCGR; Uncharacterized protein
STRINGXP_010031188.11e-115(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-39bHLH family protein