PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054870.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 167aa    MW: 17304.4 Da    PI: 7.3218
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054870.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.17e-162431055
           AP2 10 kkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  + +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g
  EcC054870.40  2 P-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRG 43
                  5.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.2E-9143IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-18152IPR016177DNA-binding domain
PROSITE profilePS5103219.098151IPR001471AP2/ERF domain
SMARTSM003802.1E-26157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-26151IPR001471AP2/ERF domain
CDDcd000183.43E-22150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
RPWGRYAAEI RDPWKKTRVW LGTFDTPEEA ALAYDGAARS LRGSKAKTNF PPPALPPPPP  60
HHHLHHLSLG PPPDAWHHYS RVALGEFLHA GALRDARLEP AGGEGPAARE ETAAAAAAAA  120
AAAAAAAGGG AAPEGDSNGG TAALLGMVGR GLPIDLNKPP PFWMESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-161511263ATERF1
3gcc_A2e-161511263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052290.14e-67PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID61e-33ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A1L6CAZ01e-48A0A1L6CAZ0_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB721e-48A0A1L6CB72_VERFO; AP2/ERF domain-containing transcription factor
STRINGXP_010052290.11e-66(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-28ERF domain protein 12