PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054881.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 189aa    MW: 22013.1 Da    PI: 10.4637
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054881.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.56.2e-24601843127
           NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                   pGf F+Ptd+el ++yL +++++++l+  + i+++d+y  ePw++    k +  + y F+  +kk  + +r  r++ sg Wk   +  + ++ +g +
  EcC054881.10  60 PGFCFQPTDQELFSDYLMRRLNEEPLPDPNLIRDCDVYGGEPWKIFD--KDRGGKFYVFTVLKKK--NRSRVDRTAGSGSWKGEQS-SDFKDLQGDV 151
                   9************************999999**************62..2334466777777666..578************7765.555555899* PP

           NAM 100 vglkktLvfy.....kgrapkgektdWvmheyr 127
                   +g kk ++f      +++a k+e+ +W+m ey+
  EcC054881.10 152 IGYKKLFTFKpkagsSAKADKAENGHWIMYEYS 184
                   **********98776679999999********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-2453185IPR003441NAC domain
PROSITE profilePS5100526.45658189IPR003441NAC domain
PfamPF023654.4E-1660184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGVRYPTRVR KPVAFTTRAF GPTFINSTRE RTSLFRKQQK PEKRHSVIPF EFITMATRHP  60
GFCFQPTDQE LFSDYLMRRL NEEPLPDPNL IRDCDVYGGE PWKIFDKDRG GKFYVFTVLK  120
KKNRSRVDRT AGSGSWKGEQ SSDFKDLQGD VIGYKKLFTF KPKAGSSAKA DKAENGHWIM  180
YEYSKHPRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-146018317138Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018729435.13e-93PREDICTED: NAC domain-containing protein 68-like isoform X1
TrEMBLA0A059BXU73e-30A0A059BXU7_EUCGR; Uncharacterized protein
STRINGXP_010055621.11e-92(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-15NAC domain containing protein 32