PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054888.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 183aa    MW: 21337.6 Da    PI: 9.4782
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054888.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.97.3e-251159351
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  i+ +  rqvtf kRr+g+lKKA+ELS+LCdae+ viifs tgklyey+s
  EcC054888.20 11 INCSKSRQVTFFKRRTGLLKKAKELSILCDAEIGVIIFSCTGKLYEYAS 59
                  666788*****************************************86 PP
2K-box73.94.6e-2575170398
         K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   +++++s+++++ + l++e + + ++++ Lq+ +R+l+Ge+L++Lsl++L++Le+ Le +lk++Rs+K++ ++e+++el++k + +++en +Lrkk 
  EcC054888.20  75 DKEQQSNTSTEIQFLKKETESMMQQLRCLQECNRRLMGEELSKLSLEDLKNLENVLEMGLKNVRSRKDQSFMEEMRELKRKLDHVEQENVELRKKS 170
                   45566689999***********************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.46161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-30160IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-24323IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-29391IPR002100Transcription factor, MADS-box
CDDcd002657.17E-35369No hitNo description
PfamPF003192.3E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-243859IPR002100Transcription factor, MADS-box
PfamPF014866.3E-2281169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.44986178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVKGKIAIRK INCSKSRQVT FFKRRTGLLK KAKELSILCD AEIGVIIFSC TGKLYEYAST  60
SMNSVIERYN SRKQDKEQQS NTSTEIQFLK KETESMMQQL RCLQECNRRL MGEELSKLSL  120
EDLKNLENVL EMGLKNVRSR KDQSFMEEMR ELKRKLDHVE QENVELRKKS KVVGRDDGES  180
EGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-20182182MEF2 CHIMERA
6byy_B4e-20182182MEF2 CHIMERA
6byy_C4e-20182182MEF2 CHIMERA
6byy_D4e-20182182MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029970.11e-128PREDICTED: MADS-box transcription factor 23-like
RefseqXP_010029971.11e-128PREDICTED: MADS-box transcription factor 23-like
RefseqXP_010029972.11e-128PREDICTED: MADS-box transcription factor 23-like
RefseqXP_010029973.11e-128PREDICTED: MADS-box transcription factor 23-like
SwissprotA2RVQ53e-62AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A218VSY76e-70A0A218VSY7_PUNGR; Uncharacterized protein
STRINGXP_010029970.11e-127(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.16e-54AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]