PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054888.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27010.9 Da    PI: 9.7616
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054888.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.8e-281059251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  ri+n++ rqvtfskRr g+lKKA ELS+LCdaev +iifsstgklyey+s
  EcC054888.40 10 RIDNTTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYEYAS 59
                  8***********************************************86 PP
2K-box82.59.8e-2881170998
         K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   + +++ + +q e+a+L+++++ L + +R+l+G++L+ Ls+keLq+Le+qLe slk iR kK+++l+++i+el +k + +++en++++kk+
  EcC054888.40  81 NPDSEVKFWQMEAARLRQQLQHLHECHRQLMGQELSGLSVKELQNLENQLEMSLKGIRVKKDQILIDEIRELNRKGDLMHQENRDMHKKV 170
                   568899**********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.099161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-32290IPR002100Transcription factor, MADS-box
CDDcd002651.37E-43276No hitNo description
PRINTSPR004043.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014867.4E-2683170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.02786176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIVIRR IDNTTSRQVT FSKRRSGLLK KARELSILCD AEVGLIIFSS TGKLYEYAST  60
SMTTLVERYK KLKEEQYQLL NPDSEVKFWQ MEAARLRQQL QHLHECHRQL MGQELSGLSV  120
KELQNLENQL EMSLKGIRVK KDQILIDEIR ELNRKGDLMH QENRDMHKKV NLTGRENTEL  180
QYKVYGTSDV TQASSCYILY NTSDAHDLHS PMNLQLSQPR PENSGKSAKV TKLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-22183183MEF2C
5f28_B4e-22183183MEF2C
5f28_C4e-22183183MEF2C
5f28_D4e-22183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029978.11e-173PREDICTED: MADS-box transcription factor 23
SwissprotQ6EP492e-95MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A059ASM91e-123A0A059ASM9_EUCGR; Uncharacterized protein
STRINGXP_010029978.11e-172(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.16e-93AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]