PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054890.100
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 179aa    MW: 18683.8 Da    PI: 5.7271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054890.100genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-056080323
                   ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                   C++C+k+F+ +  L  H+r+H
  EcC054890.100 60 CSICSKPFNGWKGLFGHMRSH 80
                   ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.86E-55583No hitNo description
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006032Biological Processchitin catabolic process
GO:0006535Biological Processcysteine biosynthetic process from serine
GO:0006855Biological Processdrug transmembrane transport
GO:0016998Biological Processcell wall macromolecule catabolic process
GO:0005634Cellular Componentnucleus
GO:0005802Cellular Componenttrans-Golgi network
GO:0016020Cellular Componentmembrane
GO:0004568Molecular Functionchitinase activity
GO:0009001Molecular Functionserine O-acetyltransferase activity
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
GO:0016844Molecular Functionstrictosidine synthase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKPLSAKGKE PALTAGSCAT AAGSPPPPGE SLEGEKAEGE GLQKKRKKPA SDAPELPKLC  60
SICSKPFNGW KGLFGHMRSH KDRPWRGVFP PPISPPKEQG HGEQAEELTS TLLDIGQRIL  120
AEQKGCETEG DGSAVAEGSA SSSSSSAEAR RKKIHMMLDL NKEAPEDGDE EGGGDNGGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14347KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034710.11e-124PREDICTED: basic salivary proline-rich protein 4
TrEMBLA0A218W1026e-16A0A218W102_PUNGR; Uncharacterized protein
STRINGXP_010034710.11e-123(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.11e-15C2H2 family protein