PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054892.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 193aa MW: 22012.1 Da PI: 4.6926

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054892.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.2	8.4e-33	7	80	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+s +++ +g+kktLv+y+grap+g++tdWvmheyrl EcC054892.20 7 RDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVTS-QNRPIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 80 5679***********************************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.518	1	103	IPR003441	NAC domain
SuperFamily	SSF101941	5.49E-40	6	104	IPR003441	NAC domain
Pfam	PF02365	7.3E-17	8	80	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009828	Biological Process	plant-type cell wall loosening
GO:0010091	Biological Process	trichome branching
GO:0035556	Biological Process	intracellular signal transduction
GO:0005634	Cellular Component	nucleus
GO:0000166	Molecular Function	nucleotide binding
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
KSFLPSRDPE WYFFGPRDRK YPNGFRTNRA TRAGYWKSTG KDRKVTSQNR PIGMKKTLVY 60 YRGRAPQGVR TDWVMHEYRL DDKESEDTSG MQDSYALCRV FKKNGFGNEV EDQGQWSLSL 120 MESSQGVVMS QEWENNSPDV PIASSSCLDQ EDDKDDSWMQ FITDDGGWGT SNPNAPPIGG 180 DFGEEVSTLN FSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-33	10	104	72	166	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-33	10	104	72	166	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-33	10	104	72	166	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-33	10	104	72	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-33	10	104	75	169	NAC domain-containing protein 19
3swm_B	4e-33	10	104	75	169	NAC domain-containing protein 19
3swm_C	4e-33	10	104	75	169	NAC domain-containing protein 19
3swm_D	4e-33	10	104	75	169	NAC domain-containing protein 19
3swp_A	4e-33	10	104	75	169	NAC domain-containing protein 19
3swp_B	4e-33	10	104	75	169	NAC domain-containing protein 19
3swp_C	4e-33	10	104	75	169	NAC domain-containing protein 19
3swp_D	4e-33	10	104	75	169	NAC domain-containing protein 19
4dul_A	3e-33	10	104	72	166	NAC domain-containing protein 19
4dul_B	3e-33	10	104	72	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00232	DAP	Transfer from AT1G73360	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010069496.1	1e-141	PREDICTED: NAC domain-containing protein 86
Swissprot	A4VCM0	3e-51	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A059AW31	1e-140	A0A059AW31_EUCGR; Uncharacterized protein
STRING	XP_010069496.1	1e-141	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-82	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]