PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054909.320
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 328aa    MW: 36110 Da    PI: 4.7595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054909.320genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-142168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
    EcC054909.320 21 KGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 68
                     678*******************************************97 PP
2Myb_DNA-binding521.6e-1674117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++++  lG++ W+ Ia++++ gRt++++k++w++
    EcC054909.320  74 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 117
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-231371IPR009057Homeodomain-like
PROSITE profilePS5129415.7091668IPR017930Myb domain
SuperFamilySSF466899.38E-2819115IPR009057Homeodomain-like
SMARTSM007171.3E-92070IPR001005SANT/Myb domain
PfamPF002493.0E-132168IPR001005SANT/Myb domain
CDDcd001672.42E-82468No hitNo description
PROSITE profilePS5129425.69969123IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2672124IPR009057Homeodomain-like
SMARTSM007175.3E-1673121IPR001005SANT/Myb domain
PfamPF002494.0E-1574117IPR001005SANT/Myb domain
CDDcd001679.55E-1276116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001678Biological Processcellular glucose homeostasis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006413Biological Processtranslational initiation
GO:0006468Biological Processprotein phosphorylation
GO:0007165Biological Processsignal transduction
GO:0008033Biological ProcesstRNA processing
GO:0015074Biological ProcessDNA integration
GO:0046835Biological Processcarbohydrate phosphorylation
GO:0055114Biological Processoxidation-reduction process
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0003924Molecular FunctionGTPase activity
GO:0004396Molecular Functionhexokinase activity
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004672Molecular Functionprotein kinase activity
GO:0005506Molecular Functioniron ion binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0005536Molecular Functionglucose binding
GO:0008270Molecular Functionzinc ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016783Molecular Functionsulfurtransferase activity
GO:0020037Molecular Functionheme binding
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRKPDASGKN SSNSNANKLR KGLWSPEEDD KLMNYMLNNG QGCWSDVARN AGLQRCGKSC  60
RLRWINYLRP DLKRGAFSPQ EEELIIHLHS ILGNRWSQIA ARLPGRTDNE IKNFWNSTIK  120
KRLKNSSSSS CRHSPNTSDS SLSSDVKDVM GGLISLQEQG LMPLYMDSLS SVQALALNQI  180
IDPLLPSLNQ GLDLPGLSGY CDANSNYCAV QGGVSGEFGR FGGVAGCGSN GDQLYVPPLE  240
SISIENVKTE NTYDSEHNSS NDLSNFNYTT DDVVDNIGNF NDYGRIESMA GLGNLWNGGE  300
EMKVGEWDLE ELMKDVSSFS SSDFQVIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27191235108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in the regulation of secondary wall biosynthesis in fibers and vessels (PubMed:17890373). Transcription activator of the mannan synthase CSLA9 that recognizes and binds to the DNA consensus sequence 5'-[AG][GT]T[AT]GGT[GA]-3' cis-regulatory element of CSLA9 promoter (PubMed:24243147). Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1. Functions redundantly with MYB83 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). Is an obligate component of the transcriptional regulatory complex toward the commitment of secondary wall cellulose synthesis. Is required for functional expression of the three secondary wall CESA genes, CESA4, CESA7 and CESA8 (PubMed:23726771). {ECO:0000269|PubMed:17890373, ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:23726771, ECO:0000269|PubMed:24243147}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (SA). Positively regulated by SND1 and homolog proteins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17890373}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045019.10.0PREDICTED: transcription factor MYB46
SwissprotQ9LXV25e-76MYB46_ARATH; Transcription factor MYB46
TrEMBLA0A059D9890.0A0A059D989_EUCGR; Uncharacterized protein
STRINGXP_010045019.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-71myb domain protein 46
Publications ? help Back to Top
  1. Zhao Q, et al.
    Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.
    Phytochemistry, 2015. 112: p. 170-8
    [PMID:25107662]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  4. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]