PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054919.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 677aa    MW: 75126.7 Da    PI: 5.8356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054919.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-14460506455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  EcC054919.20 460 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 506
                   7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-529186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-19458524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-19460522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11460505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.53E-15460510No hitNo description
SMARTSM003531.4E-17462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:0015743Biological Processmalate transport
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MATPPSSRLQ SMLQSAVQSI KWSYSLFWQI CPQQGILIWG DGYYNGPIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETNQPARR PCAALSPEDL TETEWFYLMC VSFSFPPGAG  120
LPGKAYARRQ HAWLTGANEV DSKTFSRAIL AKTVVCIPLL DGVVEFGTTE RVQEDISLVN  180
HVKTFFVDHH PPHPPKPALS EHSTSNPAAT SSGHHRFHSP PVPSYAPADP PAAANQGDEE  240
EEDDDDDDEE GESDSEAETG RQGAAAAAQN PHGAGPANNA EPSEFEMSED IRLGSPDDGS  300
NNLDSDFPML TINSTAADHQ RQVDSFRAET TRRWQMMQDP ARSGLQTPPS VPPALDELSQ  360
EDTHYSQTVS TILQNQPRWA DSTSYVSYST QSAFSKWTSR SDHLLHVPAE GTSQWLLKYI  420
LFTIPFLHTK YRDENSPKSR DGDSSSRFRK GNPQDELSAN HVLAERRRRE KLNERFIILR  480
SLVPFVTKMD KASILGDTIE YVKQLRKKIQ DLEARNRQME ADHRTKQGEL QRTTSLKDLR  540
SAASSVERSS RASLPGSGSD KRKMRIVEGG SGAKPKAVES PPPPLPPPSS ETSVQVSIIE  600
SDALLELQCP HREGLLLDLM QMLRDLRIET TAVQSSLTNG FFVAELRAKV KENVNGKKAS  660
IVEVKRAIQQ LIPHTDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-21818612192Transcription factor MYC3
4rqw_B4e-21818612192Transcription factor MYC3
4rru_A7e-21818251227Transcription factor MYC3
4rs9_A4e-21818612192Transcription factor MYC3
4ywc_A7e-21818251227Transcription factor MYC3
4ywc_B7e-21818251227Transcription factor MYC3
4yz6_A4e-21818612192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464469ERRRRE
2465470RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070223.10.0PREDICTED: basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A059AYM20.0A0A059AYM2_EUCGR; Uncharacterized protein
STRINGXP_010070223.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-100bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]