PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054928.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 250aa    MW: 28348.3 Da    PI: 9.355
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054928.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.9e-3087144258
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                   +Dgy+WrKYGqK+ k+++ pr+YYrC++a gCpvkkkv+rsaed ++++ tYeg Hnh
  EcC054928.30  87 RDGYQWRKYGQKVTKDNPSPRAYYRCSMApGCPVKKKVQRSAEDRTLLVATYEGLHNH 144
                   7***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-2976145IPR003657WRKY domain
PROSITE profilePS5081126.06281147IPR003657WRKY domain
SuperFamilySSF1182909.81E-2683145IPR003657WRKY domain
SMARTSM007741.2E-3386146IPR003657WRKY domain
PfamPF031061.5E-2488144IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009556Biological Processmicrosporogenesis
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSSNTSGQEK ILRDELERLR KENETLKVMV EVIGSKCSVL ETHLRESHCP PYHHDSNKRA  60
RIEEFPFTKS SKICVKVDEE DKSLVVRDGY QWRKYGQKVT KDNPSPRAYY RCSMAPGCPV  120
KKKVQRSAED RTLLVATYEG LHNHGTVDVP NRDRLPLRSD QSPRGQLVNR DLTLMPMMSP  180
SSIQPPIALD LGLSRSSFPQ DPKPSYLSKN LSFGNRSSDC VKIEEYAASL VRDPKFTEAL  240
ALTVARTLNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22851441371WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051128.10.0PREDICTED: WRKY transcription factor WRKY76
TrEMBLA0A059CS301e-180A0A059CS30_EUCGR; Uncharacterized protein
TrEMBLA0A059CSD51e-180A0A059CSD5_EUCGR; Uncharacterized protein
STRINGXP_010051128.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.13e-39WRKY DNA-binding protein 18