PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054936.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

TCP

Protein Properties

Length: 219aa MW: 22243.4 Da PI: 6.2698

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054936.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	53.5	9.9e-17	1	51	38	88
TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ + ++ s+s++ s++ EcC054936.50 1 ELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALSGAAGSVSQQGASIS 51 7********************************999666666555544444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	14.776	1	25	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.5E-11	1	210	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006629	Biological Process	lipid metabolic process
GO:0055085	Biological Process	transmembrane transport
GO:0005774	Cellular Component	vacuolar membrane
GO:0008081	Molecular Function	phosphoric diester hydrolase activity
GO:0008270	Molecular Function	zinc ion binding
GO:0016597	Molecular Function	amino acid binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
ELGHKSDGET IQWLLQQAEP SIIAATGTGT IPASALSGAA GSVSQQGASI SAGLHQKLDD 60 LGGPSVGPGG RHPWAMAGGG GNLGRPHHVA AGMWPGVGGF GFGSASTSAA AAPANLGGEG 120 PNYLQKIGFP GFDMAGANMG HMSFSSILSG SMSNQQLPGL ELGLSAQEGH IGVLNPQTLN 180 QIYQQMGQQA RSQQQHQHQE HQHQQQQSAA KDDSQESGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028978.1	1e-150	PREDICTED: transcription factor TCP20
Swissprot	Q9LSD5	2e-43	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A1Q3B8Z5	3e-82	A0A1Q3B8Z5_CEPFO; TCP domain-containing protein
STRING	XP_010028978.1	1e-150	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-14	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]