PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054959.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 188aa    MW: 20210.5 Da    PI: 6.8053
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054959.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.33.9e-3674149379
           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesss 79 
                   + k++++++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++ti WLl+ a+pai+++tgt++++a ++    +  
  EcC054959.10  74 PSKRSTKDRHTKVEGRGRRVRMPAACAARIFQLTRELGHRSDGETIRWLLERAEPAIIAATGTGTIPAIAMsV--DGA 149
                   679***************************************************************9955521..222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-2978146IPR005333Transcription factor, TCP
PROSITE profilePS5136926.87779133IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
METTRKHQMD EREEDDGATT LELRIDGGGH SAADDRPQDH DSAAAAVSST LTLKEEPGKE  60
ETPQQLRAAA ASLPSKRSTK DRHTKVEGRG RRVRMPAACA ARIFQLTREL GHRSDGETIR  120
WLLERAEPAI IAATGTGTIP AIAMSVDGAF KIPTSAGAAK DPEPGDPPGK KKPKRPANSD  180
YVDVGEHM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053872.11e-131PREDICTED: transcription factor TCP9
SwissprotO646471e-52TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A059CJ111e-103A0A059CJ11_EUCGR; Uncharacterized protein
STRINGXP_010053872.11e-131(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-35TCP family protein