PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054984.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 349aa    MW: 39282.2 Da    PI: 5.8464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054984.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.3e-21150199255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  EcC054984.40 150 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDEAAYKLRG 199
                   59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.57E-34149207No hitNo description
PROSITE profilePS5103223.103150207IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-23150208IPR016177DNA-binding domain
SMARTSM003802.6E-36150213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-32150208IPR001471AP2/ERF domain
PRINTSPR003673.3E-11151162IPR001471AP2/ERF domain
PfamPF008471.0E-14151199IPR001471AP2/ERF domain
PRINTSPR003673.3E-11173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAAAVEFYNS NSDPIREEFM KALEPFMKSV SPVSSPLSSS SCDSVFPQQQ QPNLNPDLCS  60
SWILNPMGLE QSGSMGLNRL SHSQIQHIQD EMLLRRQNQE LWLASAMKSP LQHENFDQCR  120
HQNHHGSPHL LRPKALPMKR VGVPPKPNKL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF  180
DTAEEAALAY DEAAYKLRGD FARLNFPRLR DGGSYLCDYN PLHSSVCAKL QAICQSLAAN  240
SQKQGKTGEP CFFPDRAMET FDAAAEAAEE MVFKVTLKNE YDADLAYPEQ DYKVENSVSS  300
PAFSDESSVA GSSSPESNLA LLGFPPSQFE IENFYLEKYP SAEIDWAAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20149207160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20149207463ATERF1
3gcc_A2e-20149207463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027841.10.0PREDICTED: ethylene-responsive transcription factor ERF060
TrEMBLA0A059AL600.0A0A059AL60_EUCGR; Uncharacterized protein
STRINGXP_010027841.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-54ERF family protein