PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055011.100
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HRT-like
Protein Properties Length: 539aa    MW: 58991 Da    PI: 9.4651
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055011.100genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like59.93.9e-19246276131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    iCGvi edG +C+++Pv+gRKRC eHKGmRi
  EcC055011.100 246 ICGVISEDGFPCTKPPVQGRKRCGEHKGMRI 276
                    8*****************************7 PP
2HRT-like65.19.4e-21335365131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    iCGviledG +C+++Pv+gRKRC eHKGmRi
  EcC055011.100 335 ICGVILEDGFPCTKPPVQGRKRCDEHKGMRI 365
                    8*****************************7 PP
3HRT-like60.82e-19424454131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    iCGvil+dG +C+++Pv+gRKRC eHKGmRi
  EcC055011.100 424 ICGVILKDGFPCSKPPVQGRKRCGEHKGMRI 454
                    8*****************************7 PP
4HRT-like50.24.4e-16508538131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    +CGv  +dG +C+r Pv+gR RCe HKGmR+
  EcC055011.100 508 VCGVDFGDGMFCTRRPVRGRVRCEHHKGMRV 538
                    7*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0006535Biological Processcysteine biosynthetic process from serine
GO:0006812Biological Processcation transport
GO:0055085Biological Processtransmembrane transport
GO:0055114Biological Processoxidation-reduction process
GO:0005737Cellular Componentcytoplasm
GO:0009505Cellular Componentplant-type cell wall
GO:0009506Cellular Componentplasmodesma
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004565Molecular Functionbeta-galactosidase activity
GO:0004713Molecular Functionprotein tyrosine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0009001Molecular Functionserine O-acetyltransferase activity
GO:0015299Molecular Functionsolute:proton antiporter activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0030246Molecular Functioncarbohydrate binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MERGDPNVVA VARLRREDCE RTKHDSAFAT WKVLVGPTDW EDYSLGKEGA ARYRVHNLPK  60
SPGPGIYELG VAASHAKLGR EIAKLDPRYI VVVYLGKADC VRTRLQQYGR SGAHLGRCSS  120
AACEIDCKTS CPTKQLGLFE EVLSRGYPIV FRWASKLDEI ASSTYCISGI ARKLLPIRPR  180
QVGIRINGKL LSEKDSFPQT GGESSNSLNR IFKFSKSRPR LVISESHAND TAILGTSPAN  240
ESFSPICGVI SEDGFPCTKP PVQGRKRCGE HKGMRIQASN SVSSRKGASN GIHDKPTVTL  300
QDHTAESWPR LVISESHAND TVISGKCPSI ESSPICGVIL EDGFPCTKPP VQGRKRCDEH  360
KGMRIHASDT VSSRTGASNG IHNKPTRTSW DHTAESLPRL VISESHANDI ATLGTCPSIE  420
SSPICGVILK DGFPCSKPPV QGRKRCGEHK GMRIQASESV SSRRGASNGI HDKLTRTSWD  480
HTAKIHELGN IVEVFPQQVD VKNNYGTVCG VDFGDGMFCT RRPVRGRVRC EHHKGMRVR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047598.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A059CNP10.0A0A059CNP1_EUCGR; Uncharacterized protein
STRINGXP_010047598.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.14e-78effector of transcription2