PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055018.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 330aa    MW: 36048.2 Da    PI: 7.3773
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055018.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l+ ++k++G g+W++ ++  g+ R++k+c++rw +yl
     EcC055018.80 14 KGAWSKEEDERLIAYIKRHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding55.81e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eEdel++ ++ +lG++ W++Ia++++ gRt++++k++w+++
     EcC055018.80  67 RGNFSDEEDELIITLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.863961IPR017930Myb domain
SuperFamilySSF466893.95E-2912108IPR009057Homeodomain-like
SMARTSM007177.9E-141363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001671.51E-111661No hitNo description
PROSITE profilePS5129428.34162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-2865116IPR009057Homeodomain-like
SMARTSM007171.8E-1766114IPR001005SANT/Myb domain
PfamPF002493.9E-1667111IPR001005SANT/Myb domain
CDDcd001674.95E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0006886Biological Processintracellular protein transport
GO:0007165Biological Processsignal transduction
GO:0015074Biological ProcessDNA integration
GO:0055114Biological Processoxidation-reduction process
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0005515Molecular Functionprotein binding
GO:0008198Molecular Functionferrous iron binding
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRSPCCESE HMNKGAWSKE EDERLIAYIK RHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SDEEDELIIT LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLHARG  120
IDPQTHRPLD YTSTAGAGAA ATHTICSNAN NSGNKATPHS TTCEELSSSS TPPPLRAAKK  180
RLNSLASAVV TVREEEESTN NSMSSDVTTT TTTTAEEVQV QLINNKNGIN MDEDGDANAD  240
LDLSLCLSVH RPKTIIRNNS TSSTASTELL RSPPPLPAHG HHEVFLSLGF HPDARHACSG  300
TSCSAPTATT LDLLSDPSSH PISGASSYWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
1h8a_C5e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027479.10.0PREDICTED: myb-related protein 308
TrEMBLA0A059AJ460.0A0A059AJ46_EUCGR; Uncharacterized protein
STRINGXP_010027479.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-84myb domain protein 4