PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC055115.80

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 446aa MW: 50399.2 Da PI: 5.1739

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC055115.80	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.2	5.9e-31	58	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyW 83 lp G++F+P+d+e++++ L+k eg k + ee+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+ + +W EcC055115.80 58 LPTGVKFDPSDSEIMHHLLAKAgFEGLKshpfI--EEFIPTVDeddgICYTHPQNLP-GVKQDGSVAHFFHRAIKAYNTGTRKRRKilgddFGDVRW 151 699**********666655533333354332..344666645557******.677888899***************74555545889 PP NAM 84 katgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++tgk+k+v++ +g +g kk++v+y++ r k+ekt+W mh+y+l EcC055115.80 152 HKTGKTKPVMV-DGVRKGWKKIMVLYTNlvRGGKSEKTNWKMHQYHL 197 *********.999*******6545888899*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.02E-37	43	216	IPR003441	NAC domain
PROSITE profile	PS51005	29.877	58	216	IPR003441	NAC domain
Pfam	PF02365	2.8E-12	59	197	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006468	Biological Process	protein phosphorylation
GO:0032472	Biological Process	Golgi calcium ion transport
GO:0003677	Molecular Function	DNA binding
GO:0004674	Molecular Function	protein serine/threonine kinase activity
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MCRPSWLVDS HRIATKIRSA SGASDPEKVK WKSNPTRACP NCQHVIDNSD VAKQWPGLPT 60 GVKFDPSDSE IMHHLLAKAG FEGLKSHPFI EEFIPTVDED DGICYTHPQN LPGVKQDGSV 120 AHFFHRAIKA YNTGTRKRRK ILGDDFGDVR WHKTGKTKPV MVDGVRKGWK KIMVLYTNLV 180 RGGKSEKTNW KMHQYHLGTE EDEKDGEFVI SKIFYDHQQQ QLDQGEKNEQ NNRERVDATT 240 MKADPVSPKS ATPDPPRTER RSCDSDPVQD SACGGPLALE KHNAILMDFV KDDTLLHVET 300 QCADLDGPLE IENPQHREQT ISAPEMMVDG DQQAEEESKW WDSESQNLLD SQQLVEGLSL 360 CDEFLQSQSP NRDDINHHVE SKKRILLSDY AKLGPEDLKK DLEECHNLAL DPANIELDTP 420 PDFRLSQLEF GSQDSFLAWG GSKVVD

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MCRPSWLVDS HRIATKIRSA SGASDPEKVK WKSNPTRACP NCQHVIDNSD VAKQWPGLPT  60
GVKFDPSDSE IMHHLLAKAG FEGLKSHPFI EEFIPTVDED DGICYTHPQN LPGVKQDGSV  120
AHFFHRAIKA YNTGTRKRRK ILGDDFGDVR WHKTGKTKPV MVDGVRKGWK KIMVLYTNLV  180
RGGKSEKTNW KMHQYHLGTE EDEKDGEFVI SKIFYDHQQQ QLDQGEKNEQ NNRERVDATT  240
MKADPVSPKS ATPDPPRTER RSCDSDPVQD SACGGPLALE KHNAILMDFV KDDTLLHVET  300
QCADLDGPLE IENPQHREQT ISAPEMMVDG DQQAEEESKW WDSESQNLLD SQQLVEGLSL  360
CDEFLQSQSP NRDDINHHVE SKKRILLSDY AKLGPEDLKK DLEECHNLAL DPANIELDTP  420
PDFRLSQLEF GSQDSFLAWG GSKVVD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269\|PubMed:19549833, ECO:0000269\|PubMed:20634150, ECO:0000269\|PubMed:24399300, ECO:0000305\|PubMed:24736489}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269\|PubMed:23907539}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066746.1	0.0	PREDICTED: NAC domain-containing protein 8
Swissprot	Q6NQK2	1e-173	NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBL	A0A059BGG6	0.0	A0A059BGG6_EUCGR; Uncharacterized protein
STRING	XP_010066746.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-175	NAC family protein

Publications ? help Back to Top
Yi D, et al. The Arabidopsis SIAMESE-RELATED cyclin-dependent kinase inhibitors SMR5 and SMR7 regulate the DNA damage checkpoint in response to reactive oxygen species. Plant Cell, 2014. 26(1): p. 296-309 [PMID:24399300] Biever JJ,Brinkman D,Gardner G UV-B inhibition of hypocotyl growth in etiolated Arabidopsis thaliana seedlings is a consequence of cell cycle arrest initiated by photodimer accumulation. J. Exp. Bot., 2014. 65(11): p. 2949-61 [PMID:24591052] Hu Z,Cools T,Kalhorzadeh P,Heyman J,De Veylder L Deficiency of the Arabidopsis helicase RTEL1 triggers a SOG1-dependent replication checkpoint in response to DNA cross-links. Plant Cell, 2015. 27(1): p. 149-61 [PMID:25595823] Chen P,Umeda M DNA double-strand breaks induce the expression of flavin-containing monooxygenase and reduce root meristem size in Arabidopsis thaliana. Genes Cells, 2015. 20(8): p. 636-46 [PMID:26033196] Sjogren CA,Bolaris SC,Larsen PB Aluminum-Dependent Terminal Differentiation of the Arabidopsis Root Tip Is Mediated through an ATR-, ALT2-, and SOG1-Regulated Transcriptional Response. Plant Cell, 2015. 27(9): p. 2501-15 [PMID:26320227] Yoshiyama KO SOG1: a master regulator of the DNA damage response in plants. Genes Genet. Syst., 2016. 90(4): p. 209-16 [PMID:26617076] Weimer AK, et al. The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis. EMBO J., 2016. 35(19): p. 2068-2086 [PMID:27497297] Davis OM,Ogita N,Inagaki S,Takahashi N,Umeda M DNA damage inhibits lateral root formation by up-regulating cytokinin biosynthesis genes in Arabidopsis thaliana. Genes Cells, 2016. 21(11): p. 1195-1208 [PMID:27658920] Pedroza-García JA, et al. Function of the Plant DNA Polymerase Epsilon in Replicative Stress Sensing, a Genetic Analysis. Plant Physiol., 2017. 173(3): p. 1735-1749 [PMID:28153919] Horvath BM, et al. Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control. EMBO J., 2017. 36(9): p. 1261-1278 [PMID:28320736] Sjogren CA,Larsen PB SUV2, which encodes an ATR-related cell cycle checkpoint and putative plant ATRIP, is required for aluminium-dependent root growth inhibition in Arabidopsis. Plant Cell Environ., 2017. 40(9): p. 1849-1860 [PMID:28556304] Yoshiyama KO,Kaminoyama K,Sakamoto T,Kimura S Increased Phosphorylation of Ser-Gln Sites on SUPPRESSOR OF GAMMA RESPONSE1 Strengthens the DNA Damage Response in Arabidopsis thaliana. Plant Cell, 2017. 29(12): p. 3255-3268 [PMID:29208704] Johnson RA, et al. SUPPRESSOR OF GAMMA RESPONSE1 Links DNA Damage Response to Organ Regeneration. Plant Physiol., 2018. 176(2): p. 1665-1675 [PMID:29222192] Ogita N, et al. Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis. Plant J., 2018. 94(3): p. 439-453 [PMID:29430765] Cao X, et al. Roles of MSH2 and MSH6 in cadmium-induced G2/M checkpoint arrest in Arabidopsis roots. Chemosphere, 2018. 201: p. 586-594 [PMID:29533809]