PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055122.120
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 220aa    MW: 24053.4 Da    PI: 6.7821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055122.120genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000178100123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C + F++   L  H+++H
  EcC055122.120  78 YTCTFCRREFRSAQALGGHMNVH 100
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-675105No hitNo description
PfamPF139121.6E-578101IPR007087Zinc finger, C2H2
SMARTSM003550.006678100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15778105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006281Biological ProcessDNA repair
GO:0006506Biological ProcessGPI anchor biosynthetic process
GO:0006886Biological Processintracellular protein transport
GO:0009733Biological Processresponse to auxin
GO:0016192Biological Processvesicle-mediated transport
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0030131Cellular Componentclathrin adaptor complex
GO:0003677Molecular FunctionDNA binding
GO:0004518Molecular Functionnuclease activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016746Molecular Functiontransferase activity, transferring acyl groups
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGIGLDDLLS LTSQAHKEAR SQETQHQNQV TDPSSSSKNR SWMWNANQTQ QDDDSWEVKA  60
FAEDTRNMMG ATWPPRSYTC TFCRREFRSA QALGGHMNVH RRDRARLHQS QPCSSSAAPL  120
LVIPANEFVV NGGLCFPYPL PGPNGIFNTS SPPSTLLSVS PYPPNDNNFP SPSQSYTRKY  180
DTAGSKSPKV DDTSNNSGDS AGDGLDLELR LGHGPAASPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-1373100229superman protein
2l1o_A2e-1373100229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058171.11e-157PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A059C0N71e-120A0A059C0N7_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010058171.11e-156(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-39C2H2 family protein