PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055126.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 417aa    MW: 45790.9 Da    PI: 7.4356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055126.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.51.6e-05330374655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   n +++ R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  EcC055126.40 330 NNVDQVRKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 374
                   6678889999*************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.988324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-12329387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-9330381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-5330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.57E-6330378No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0000287Molecular Functionmagnesium ion binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0010333Molecular Functionterpene synthase activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MESANRHQQY DQFQDHHAGS SSSSSLDSPS CYGSVDNSHS WTPNTSFLNT TGNYLNSNII  60
VANSGADPTP KHGILNPLLQ SSSVQIDIGS HLTRNNSSVE PFGNNVDLAY GVKEELSDSL  120
RFTDLLNSTQ SGIEDLHLYR STSHVKNTDE VRDDLSELSQ KLMLKTLTST CQINLNAYSP  180
GRDFFYPSAQ HYVQPGIFSQ IHPSIDVSNF SQSRGSMSSS LDINSPAFDP LNGRFSGGIA  240
NTTQGTDLGM NRESLAFGLQ RMRQSAQHHD RIPPVFTTKT TEAKRPGSSL EPNKTSGPHH  300
QVAPKKTRVD QSTRAASAPF KNAYTILCGN NVDQVRKEKL GDRIAALQQL VAPFGKTDTA  360
SVLMEAIGYI KFLQNQVQVL ASPFSFLCTP CLSYLFLNSI HRNQSPRSLS ILFCILN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061277.10.0PREDICTED: transcription factor bHLH110
TrEMBLA0A059BPT20.0A0A059BPT2_EUCGR; Uncharacterized protein
STRINGXP_010061277.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-34bHLH family protein