PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055147.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 93aa    MW: 10589.8 Da    PI: 5.8591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055147.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81.1e-07652346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+   +l+ +a + +  +   +W   ar +g +++ +++k ++ +
     EcC055147.80  6 TWTPKQNKLFENALAIYDRDapdRWQNLARAVGGNKSVEDVKRHYEM 52
                     7*****************99*************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.869258IPR017884SANT domain
SMARTSM007171.6E-6356IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-11561IPR009057Homeodomain-like
CDDcd001671.45E-5654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006284Biological Processbase-excision repair
GO:0006366Biological Processtranscription from RNA polymerase II promoter
GO:0042545Biological Processcell wall modification
GO:0055085Biological Processtransmembrane transport
GO:0005618Cellular Componentcell wall
GO:0005665Cellular ComponentDNA-directed RNA polymerase II, core complex
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0005515Molecular Functionprotein binding
GO:0022891Molecular Functionsubstrate-specific transmembrane transporter activity
GO:0030599Molecular Functionpectinesterase activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSGSTWTPK QNKLFENALA IYDRDAPDRW QNLARAVGGN KSVEDVKRHY EMLVEDVNQI  60
EAGQVPLPNY RKLAAPNSKG CSSFMDEEQR YVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-27371774RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060952.12e-62PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1737e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A059BP085e-61A0A059BP08_EUCGR; Uncharacterized protein
STRINGXP_010060952.18e-62(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.18e-34RAD-like 6