PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055170.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 163aa    MW: 19552.3 Da    PI: 8.0192
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055170.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.31.8e-33181521128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                   lp+G+rFhPtdeel++++L++++ g + +   +i+e+  ++k++Pw+Lp+       v+++e ew+f s+   k++++++  r+t sg Wk+tg++k
  EcC055170.30  18 LPVGYRFHPTDEELINHFLRRHILGYRDDP-CIIPETpFVHKFDPWHLPRlfrersIVRSREAEWWFLSRLLFKTQKNSKYDRQTPSGHWKTTGQEK 113
                   799**********************99777.568888689*********65777765666888********************************** PP

           NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ +k +++l+g+ + Lvf +++ +++++t Wvmhey l
  EcC055170.30 114 KINAKsTNRLIGTMRNLVFIENEGSSAKETVWVMHEYCL 152
                   ***9877788***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-3516159IPR003441NAC domain
PROSITE profilePS5100536.66518163IPR003441NAC domain
PfamPF023655.7E-2119152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0070291Biological ProcessN-acylethanolamine metabolic process
GO:0005774Cellular Componentvacuolar membrane
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003887Molecular FunctionDNA-directed DNA polymerase activity
GO:0047412Molecular FunctionN-(long-chain-acyl)ethanolamine deacylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MPCLIPVDVF YEHIDCFLPV GYRFHPTDEE LINHFLRRHI LGYRDDPCII PETPFVHKFD  60
PWHLPRLFRE RSIVRSREAE WWFLSRLLFK TQKNSKYDRQ TPSGHWKTTG QEKKINAKST  120
NRLIGTMRNL VFIENEGSSA KETVWVMHEY CLHDNYGANF LDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-231815215140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718048.11e-119PREDICTED: protein NTM1-like 9
TrEMBLA0A059ASH61e-118A0A059ASH6_EUCGR; Uncharacterized protein
STRINGXP_010030909.11e-118(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.18e-30NAC domain containing protein 71