PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055189.90
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 222aa    MW: 24377.4 Da    PI: 4.6944
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055189.90genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.4e-3971071100
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                   +C aCk+lrrkC++dCv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lq+q+++l++e++ 
  EcC055189.90   7 SCGACKFLRRKCTSDCVFAPYFCYDQaSTHFAAVHKVFGASNVSKLLLHLPVHTRSDAAITISYEALARMRDPIYGCVAHIFALQEQVANLQEEIEI 103
                   6************************9779******************************************************************99 PP

        DUF260  97 lkee 100
                   l+++
  EcC055189.90 104 LGTQ 107
                   8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3566108IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-377103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006457Biological Processprotein folding
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0003729Molecular FunctionmRNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0016746Molecular Functiontransferase activity, transferring acyl groups
GO:0016779Molecular Functionnucleotidyltransferase activity
GO:0030246Molecular Functioncarbohydrate binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCTS DCVFAPYFCY DQASTHFAAV HKVFGASNVS KLLLHLPVHT  60
RSDAAITISY EALARMRDPI YGCVAHIFAL QEQVANLQEE IEILGTQMAN LGVGVPSWRN  120
SPVPGNPSDF GPQFSGSDAM NVQFYLNHQQ DPLLPQAEAA TTTNLQALES SMNEEFPPIY  180
GWEDQNPFCD NYPNLLERLF EGVDREAFSS CSWLNGGNGL GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3531147117LOB family transfactor Ramosa2.1
5ly0_B1e-3531147117LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067432.11e-167PREDICTED: LOB domain-containing protein 29
SwissprotQ9LHS84e-60LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A059BH531e-165A0A059BH53_EUCGR; Uncharacterized protein
STRINGXP_010067432.11e-166(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-62LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]