PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC055192.60

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 251aa MW: 28568.4 Da PI: 9.778

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC055192.60	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.5	3.8e-51	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 lppGfrFhPtdeelv +yL++kv + +l++ ++i+ev+++k++PwdLp ++e yfFs+r+ ky++g+r+nrat sgyWkatg d++++s+ EcC055192.60 14 LPPGFRFHPTDEELVLQYLRRKVYSFPLPA-SIIPEVEVCKSDPWDLPGD---LDQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDRQIVSSrg 106 79**************************.89***********54...46899********************************977 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLvfy+g+ p+g+ktdW+mheyrl EcC055192.60 107 sQSQVVGMKKTLVFYRGKPPSGSKTDWIMHEYRL 140 77778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-58	9	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.082	14	173	IPR003441	NAC domain
Pfam	PF02365	1.1E-26	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006468	Biological Process	protein phosphorylation
GO:0006629	Biological Process	lipid metabolic process
GO:0003677	Molecular Function	DNA binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0008081	Molecular Function	phosphoric diester hydrolase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDKLNFVKNG VLRLPPGFRF HPTDEELVLQ YLRRKVYSFP LPASIIPEVE VCKSDPWDLP 60 GDLDQERYFF STREAKYPNG NRSNRATVSG YWKATGIDRQ IVSSRGSQSQ VVGMKKTLVF 120 YRGKPPSGSK TDWIMHEYRL VNPEASVPPK IMNLNQTPVE PMESWVLCRI FLKRRSSKNE 180 GETPVPCQNL KEGPKSRKNK PVFYDFMTRD LNLVPSSSSS GSSGVTEVSS HNNTDEHEES 240 SCNSLRKALK H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	12	178	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	12	178	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	12	178	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	12	178	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	12	178	18	173	NAC domain-containing protein 19
3swm_B	1e-50	12	178	18	173	NAC domain-containing protein 19
3swm_C	1e-50	12	178	18	173	NAC domain-containing protein 19
3swm_D	1e-50	12	178	18	173	NAC domain-containing protein 19
3swp_A	1e-50	12	178	18	173	NAC domain-containing protein 19
3swp_B	1e-50	12	178	18	173	NAC domain-containing protein 19
3swp_C	1e-50	12	178	18	173	NAC domain-containing protein 19
3swp_D	1e-50	12	178	18	173	NAC domain-containing protein 19
4dul_A	1e-50	12	178	15	170	NAC domain-containing protein 19
4dul_B	1e-50	12	178	15	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010044859.1	0.0	PREDICTED: NAC domain-containing protein 83 isoform X2
Swissprot	Q9FY93	2e-96	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A059D8C8	0.0	A0A059D8C8_EUCGR; Uncharacterized protein
STRING	XP_010044858.1	1e-177	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-88	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]