PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055200.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 273aa    MW: 30710.2 Da    PI: 8.9498
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055200.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.2e-1371117354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r+h+e+ErrRR+riNs +++Lr l+P        K++Ka+ L +++e +k+L
  EcC055200.40  71 RNHSEAERRRRERINSHLATLRGLVPGE-----DKMDKATLLAHVIEEVKEL 117
                   58*************************7.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.37768117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1371121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1071117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1372120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-1174123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.95E-5156224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MALYSNYCDG LHGSDPHQMF DPLLRANGSA PAMDTPQSLV LDGEKSELVI KAPNRAAKKN  60
VPEEKALAAL RNHSEAERRR RERINSHLAT LRGLVPGEDK MDKATLLAHV IEEVKELKKT  120
ALEASKGLLV PLDADEVKVE PLDDATGNGT FSFKASICCQ YRPELLSDLR QAINALHLKI  180
VKAEISTLES RLRNEFIFLS GKEQFSYNWS LQRQLLASSI RQALCSSLLR LLYRLSTRQE  240
RRSQVKGEES LSSIPRARRC EGLDYEIGRQ RVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052204.11e-166PREDICTED: transcription factor bHLH30
TrEMBLA0A059CCE91e-165A0A059CCE9_EUCGR; Uncharacterized protein
STRINGXP_010052204.11e-166(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.19e-35bHLH family protein