PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055206.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 416aa    MW: 46327.3 Da    PI: 8.6065
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055206.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.7e-10327375247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++WT  E  +l+++v  lG g+W++I r +    k+Rt  ++k++w+++
     EcC055206.80 327 MPWTLTEVMRLIEGVSHLGVGRWSKIKRLLFsssKHRTSVDLKDKWRNL 375
                      69*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.026321380IPR017930Myb domain
SuperFamilySSF466891.42E-15323383IPR009057Homeodomain-like
SMARTSM007172.4E-9325378IPR001005SANT/Myb domain
PfamPF002492.1E-7327375IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-11328377IPR009057Homeodomain-like
CDDcd116603.66E-19328377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006559Biological ProcessL-phenylalanine catabolic process
GO:0006979Biological Processresponse to oxidative stress
GO:0015074Biological ProcessDNA integration
GO:0055114Biological Processoxidation-reduction process
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0005515Molecular Functionprotein binding
GO:0016841Molecular Functionammonia-lyase activity
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDSEYMDDAS NIICFPSEDS HLQGTLALQS ELMLLDGRAC STAAATESTS CQNSVSLDHM  60
TVRELQDAFH SMFGRETAVI DKQWLKRRIL FGLHNNNELD RPLNLTCCGS ISQEKEDKST  120
VASGTESSEN AFNSPKWMLD GGFKMDEKMK GSSSDSQTNY SSGASESDVS FHGKDENEVG  180
GLVTGKRVHK PPRRYIEESS EFKSRSHPRR SSVSVKSPKN KVVDAKIHKQ CEEEVNETAG  240
SGNQIGSFDG ACIQVPFGLP VEEGQAKGNT LCLRQDSDIC PKTEHATIPS EISDLPCPSA  300
KSQTVVKDER VIRSNMQKGR RRRKHHMPWT LTEVMRLIEG VSHLGVGRWS KIKRLLFSSS  360
KHRTSVDLKD KWRNLVKASC TQLRKKRKGL QVRKQLSHQA PESVLCRVKE LASSCA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031962.10.0PREDICTED: uncharacterized protein LOC104421640 isoform X1
TrEMBLA0A059ADA10.0A0A059ADA1_EUCGR; Uncharacterized protein
STRINGXP_010031962.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.19e-27TRF-like 6