PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055207.130
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19660.7 Da    PI: 8.8975
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055207.130genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.7e-211253445
                   -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    ++  rqvtfskRr+g++KKA+EL +LC++++a+i+fs+ gk
  EcC055207.130 12 TDSCTRQVTFSKRRTGLFKKANELAILCAVQIAIIVFSPGGK 53
                   57889**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.623161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-27172IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-32160IPR002100Transcription factor, MADS-box
CDDcd002658.06E-33274No hitNo description
PRINTSPR004042.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006812Biological Processcation transport
GO:0055085Biological Processtransmembrane transport
GO:0005840Cellular Componentribosome
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0015299Molecular Functionsolute:proton antiporter activity
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGRRKIEIQM VTDSCTRQVT FSKRRTGLFK KANELAILCA VQIAIIVFSP GGKPFSFGHP  60
NVESILHRFL NQEKTPDEGT SKDAKSRDES ANDENLNQQL LDLLKRLNAE EKRGEMLEKM  120
VKAKRAAKGQ PLGLPELGEL KRSLEDLREK LRDRMDEIEG CSALLLLAEN QPMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-16183183MEF2C
5f28_B4e-16183183MEF2C
5f28_C4e-16183183MEF2C
5f28_D4e-16183183MEF2C
6byy_A3e-16183183MEF2 CHIMERA
6byy_B3e-16183183MEF2 CHIMERA
6byy_C3e-16183183MEF2 CHIMERA
6byy_D3e-16183183MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054263.11e-112PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A059CDG31e-110A0A059CDG3_EUCGR; Uncharacterized protein
STRINGXP_010054263.11e-111(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-34AGAMOUS-like 29