PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055208.120
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 257aa    MW: 28747.8 Da    PI: 9.4784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055208.120genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-1077123455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h + Er+  ++iN+++  L++++P+       K++K +iL  ++ Y+++Lq
  EcC055208.120  77 NHAISERKQKEKINDRLGVLKSMVPSV-----SKVDKLSILDDTIAYLRELQ 123
                    69999*********************6.....4******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.29773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-1474135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-1076127No hitNo description
PfamPF000105.8E-877123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-1577131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1079128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0006750Biological Processglutathione biosynthetic process
GO:0007018Biological Processmicrotubule-based movement
GO:0015074Biological ProcessDNA integration
GO:0055114Biological Processoxidation-reduction process
GO:0005874Cellular Componentmicrotubule
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0003924Molecular FunctionGTPase activity
GO:0004357Molecular Functionglutamate-cysteine ligase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005200Molecular Functionstructural constituent of cytoskeleton
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0008017Molecular Functionmicrotubule binding
GO:0008270Molecular Functionzinc ion binding
GO:0016706Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
LIVGPHFQRG NRESSFVAWK KGWFPSRQTA QGGTPQGVLK RILFQVPRMY DNALQSPLEV  60
GGENGVWRPE ADEIGLNHAI SERKQKEKIN DRLGVLKSMV PSVSKVDKLS ILDDTIAYLR  120
ELQRKVEELE SWGIGMEVEA KSRRKPHDMV ERTSDNCGTH VTGSGKKPVT NKRKASNIDS  180
MELETNSVVQ RDVSADNLTV KINDRTVLIE MRCSSREGVL LEIINEVNNL HLDSHSVQSL  240
TIDGILSLTI KSKVGIK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053253.11e-175PREDICTED: transcription factor EGL1
TrEMBLA0A059CGD51e-174A0A059CGD5_EUCGR; Uncharacterized protein
STRINGXP_010053253.11e-175(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-56bHLH family protein