PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055215.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 219aa    MW: 24790.6 Da    PI: 10.1451
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055215.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507.1e-1667112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v ++G+ +W++Ia+++  gR++k+c++rw++ 
     EcC055215.20  67 RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 112
                      899*****************************.***********996 PP
2Myb_DNA-binding57.43.4e-18119162146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
     EcC055215.20 119 RRAFTEEEEERLMQAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 162
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.64362113IPR017930Myb domain
SMARTSM007172.1E-1366115IPR001005SANT/Myb domain
SuperFamilySSF466891.83E-2867160IPR009057Homeodomain-like
PfamPF002492.1E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2568120IPR009057Homeodomain-like
CDDcd001672.35E-1270111No hitNo description
PROSITE profilePS5129427.255114168IPR017930Myb domain
SMARTSM007172.4E-14118166IPR001005SANT/Myb domain
PfamPF002497.7E-15119161IPR001005SANT/Myb domain
CDDcd001671.20E-11121161No hitNo description
Gene3DG3DSA:1.10.10.601.9E-21121167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGSLSLAAAT ARHGLADLLG ATTSDPIDHR RRKAHGNGVR ESNSTSDEHD GGRVDGEAGG  60
QSKLCARGHW RPAEDTKLKE LVGLYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRR  120
AFTEEEEERL MQAHRVYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE QSTAYRRRKL  180
SLSRSPSSGY ARPDETPAGH RDRDDYDDAP ARRDCPASF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-34651685108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715352.11e-159PREDICTED: uncharacterized protein LOC104455746
SwissprotQ9SEZ47e-78MY105_ARATH; Transcription factor MYB105
TrEMBLA0A059BGH31e-157A0A059BGH3_EUCGR; Uncharacterized protein
STRINGXP_010068785.11e-158(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-76myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]