PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055228.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 129aa    MW: 14892.4 Da    PI: 10.5714
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055228.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-074302148
                     TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48
                     gg W+++ +  g++R++k+c++rw++yl
     EcC055228.40  4 GG-WSKVCKATGLKRCGKSCRLRWLNYL 30
                     56.*********9**************7 PP
2Myb_DNA-binding52.79.7e-173679146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ ++eE+el+++++++lG++ W +Ia +++ gRt++++k++w++
     EcC055228.40 36 RGNISPEEEELIIRLHRLLGNR-WVLIAGRLP-GRTDNEIKNYWNS 79
                     7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.501130IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-10333IPR009057Homeodomain-like
PfamPF002494.5E-6430IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-211691IPR009057Homeodomain-like
PROSITE profilePS5129425.8043185IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-253485IPR009057Homeodomain-like
SMARTSM007176.4E-163583IPR001005SANT/Myb domain
PfamPF002496.7E-153679IPR001005SANT/Myb domain
CDDcd001671.18E-104078No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016757Molecular Functiontransferase activity, transferring glycosyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MVKGGWSKVC KATGLKRCGK SCRLRWLNYL RPDIKRGNIS PEEEELIIRL HRLLGNRWVL  60
IAGRLPGRTD NEIKNYWNST IKKKLAQDNN DPPMNSKCED DKLTIPKYSA LLPPTNKNLH  120
KPTKAKEEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22178540108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in the regulation of secondary wall biosynthesis in fibers and vessels (PubMed:17890373). Transcription activator of the mannan synthase CSLA9 that recognizes and binds to the DNA consensus sequence 5'-[AG][GT]T[AT]GGT[GA]-3' cis-regulatory element of CSLA9 promoter (PubMed:24243147). Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1. Functions redundantly with MYB83 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). Is an obligate component of the transcriptional regulatory complex toward the commitment of secondary wall cellulose synthesis. Is required for functional expression of the three secondary wall CESA genes, CESA4, CESA7 and CESA8 (PubMed:23726771). {ECO:0000269|PubMed:17890373, ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:23726771, ECO:0000269|PubMed:24243147}.
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (SA). Positively regulated by SND1 and homolog proteins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17890373}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051341.11e-66PREDICTED: trichome differentiation protein GL1-like
SwissprotP813938e-41MYB08_ANTMA; Myb-related protein 308
SwissprotQ9LXV28e-41MYB46_ARATH; Transcription factor MYB46
TrEMBLA0A059CUD02e-56A0A059CUD0_EUCGR; Uncharacterized protein
STRINGXP_010051341.14e-66(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-34myb domain protein 46
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Zhao Q, et al.
    Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.
    Phytochemistry, 2015. 112: p. 170-8
    [PMID:25107662]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  5. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]