PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC058338.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bZIP

Protein Properties

Length: 167aa MW: 17854.8 Da PI: 4.5732

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC058338.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.1	8.2e-13	82	136	2	56
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +++k+ rr +NR AA rsR+RKka+++ Le k+k Le+e ++L l+ e+ EcC058338.10 82 PASKKLRRQLRNRDAAVRSRERKKAYVKDLEVKSKYLEGECRRLGRLLQCVMAES 136 689*************************************998876666555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.6E-7	81	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.013	83	140	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.3E-11	83	140	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.3E-11	83	144	No hit	No description
SuperFamily	SSF57959	5.5E-11	85	141	No hit	No description
CDD	cd14704	3.73E-14	86	137	No hit	No description
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
IENILMKDDE DGGVVGGGIR ADSSQEFCDR FLADVLVESP GDGSAEIADG SGDKEEPGSS 60 DDGGIEAAKV DGANGGGEAY DPASKKLRRQ LRNRDAAVRS RERKKAYVKD LEVKSKYLEG 120 ECRRLGRLLQ CVMAESQALR FSLQNSECGA SVAKLESAVL SGMRLEP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010041444.1	1e-93	PREDICTED: bZIP transcription factor 60
Swissprot	Q69XV0	7e-26	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	A0A058ZRB7	3e-92	A0A058ZRB7_EUCGR; Uncharacterized protein
STRING	XP_010041444.1	6e-93	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4634	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	2e-12	basic region/leucine zipper motif 60

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]