PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC061967.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 169aa    MW: 18823.3 Da    PI: 8.6321
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC061967.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.3e-162769145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+
     EcC061967.10 27 RGNITSDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWN 69
                     7999******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.333121IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-11733IPR009057Homeodomain-like
SuperFamilySSF466891.11E-19774IPR009057Homeodomain-like
PROSITE profilePS5129423.2462276IPR017930Myb domain
SMARTSM007171.5E-142674IPR001005SANT/Myb domain
PfamPF002494.4E-142770IPR001005SANT/Myb domain
CDDcd001673.80E-113172No hitNo description
Gene3DG3DSA:1.10.10.609.3E-203472IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
ISCAGLKRCG KSCRMRWLNY LRPDIKRGNI TSDEEDLILR LHKLLGNRWS LIAGRLPGRT  60
DNEIKNYWNA NLAKREQGGK KPDPSKTEKI KPIAASEVKQ DETQNPVLVG DSALRNKDIV  120
TLANSETAKS GQSSEYESSD ASLPASMSRE RAHLEQLMLD CTVGESDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2087540107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047391.11e-112PREDICTED: transcription factor WER
TrEMBLA0A059CMZ81e-111A0A059CMZ8_EUCGR; Uncharacterized protein
STRINGXP_010047391.11e-111(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-42MYB family protein