PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC062590.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 81aa    MW: 8790.31 Da    PI: 10.2232
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC062590.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.3e-201254345
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  i +   r vt+skRr+g++KKA+EL+ LC+a++avi+fs+ gk
  EcC062590.10 12 IADPAARLVTYSKRRKGLFKKASELCRLCGARAAVIVFSPAGK 54
                  7777889**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.638262IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-24261IPR002100Transcription factor, MADS-box
CDDcd002669.06E-25373No hitNo description
SuperFamilySSF554551.12E-22468IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-15424IPR002100Transcription factor, MADS-box
PfamPF003194.3E-231158IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-152439IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-153960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MGKRRRTEIA KIADPAARLV TYSKRRKGLF KKASELCRLC GARAAVIVFS PAGKPCSFFS  60
DPSVEDDVIA DHVDAVPPMG L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715991.12e-51PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU41e-17AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A059D1D18e-35A0A059D1D1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010026973.15e-48(Eucalyptus grandis)
STRINGXP_010027015.13e-48(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-20AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]