PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC062781.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 184aa MW: 20726.1 Da PI: 10.2483

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC062781.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.8	1.2e-18	2	44	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W+ eEd++l++a+kq G++ W+ Ia++++ gRt++++k++w+ EcC062781.10 2 KDSWSIEEDKILIQAHKQIGNK-WAEIAKRLP-GRTENSIKNHWN 44 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.1E-15	1	49	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	24.862	1	51	IPR017930	Myb domain
Pfam	PF00249	8.6E-17	2	44	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.08E-16	2	55	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-19	4	45	IPR009057	Homeodomain-like
CDD	cd00167	1.60E-13	4	47	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
QKDSWSIEED KILIQAHKQI GNKWAEIAKR LPGRTENSIK NHWNATKRRQ FTKRKLLPDS 60 NNSNLLQNYI RSVTTPSPPK WSPPARGPDH RHHNTKKQSL SLSKAAISRG LDMQPEAANC 120 PQQVPDHHHQ LPPPLAERPA SNYFRYPMVD GNGNLGLYQV KDHHYHQGLS EGGGNGGGGR 180 CDND

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1idy_A	1e-19	1	51	4	54	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A	1e-19	1	51	4	54	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269\|PubMed:16214903, ECO:0000269\|PubMed:17693534, ECO:0000269\|PubMed:17937500, ECO:0000269\|PubMed:18410484, ECO:0000269\|PubMed:23093426}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010041992.1	1e-125	PREDICTED: myb-like protein AA, partial
Swissprot	Q9S7L2	2e-30	MYB98_ARATH; Transcription factor MYB98
TrEMBL	A0A2K3ND24	1e-29	A0A2K3ND24_TRIPR; Transcription factor MYB 98-like protein (Fragment)
TrEMBL	A0A3N6QPA8	3e-29	A0A3N6QPA8_BRACR; Uncharacterized protein
STRING	XP_010041992.1	1e-124	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13303	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	5e-33	myb domain protein 98

Publications ? help Back to Top
Mendes MA, et al. Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis. Development, 2016. 143(15): p. 2780-90 [PMID:27338615]