PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC062834.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 177aa MW: 20140.2 Da PI: 10.1571

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC062834.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	5.1e-10	15	65	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 + +E++RR r+N ++L +l+P+ ++sk ls + L +A+ YI +L EcC062834.10 15 RKTVEKNRRIRMNILCSKLASLIPQHHITTSKElLSRQDRLDQATSYITQL 65 6789*******************667888888*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.69	10	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-9	12	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-10	13	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0029	16	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-7	16	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.24E-4	18	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MNKSTRTNQS LKVERKTVEK NRRIRMNILC SKLASLIPQH HITTSKELLS RQDRLDQATS 60 YITQLKERID GLKLRKEQAV LLSEGIDTSS SLTSSIDQKA KLGFVPPVFQ LRDHGLGLDV 120 ILISGRRKNF MLYEVIRILE EEGAEVVNAS FSVVGDKIFH TLHAQGTHYL ELFHRGC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010039150.1	1e-110	PREDICTED: transcription factor ORG2
TrEMBL	A0A059A5A0	1e-108	A0A059A5A0_EUCGR; Uncharacterized protein
STRING	XP_010039150.1	1e-109	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	9e-26	bHLH family protein