PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC065589.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 119aa MW: 13678.4 Da PI: 11.024

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC065589.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	40.3	9.9e-13	2	60	70	128
NAM 70 tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 +g+r+nr t g+Wkat kd + ++ ++g k+ L+f +g + ++g t mheyrl EcC065589.10 2 NGSRPNRRTPGGFWKATTKDSVIQM-ENMTIGYKRLLAFSRGaSPRRGDGTALSMHEYRL 60 799**************999999.9999******995667899*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-18	1	92	IPR003441	NAC domain
PROSITE profile	PS51005	22.387	1	93	IPR003441	NAC domain
Pfam	PF02365	6.0E-5	6	60	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
PNGSRPNRRT PGGFWKATTK DSVIQMENMT IGYKRLLAFS RGASPRRGDG TALSMHEYRL 60 AEDEKRNRTG TDEKKGAKDK RLDEWVLCKV FTPKHAKHSK NGRKSDHPLK TRNEQNRDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-18	1	91	84	163	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-18	1	91	84	163	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-18	1	91	84	163	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-18	1	91	84	163	NO APICAL MERISTEM PROTEIN
3swm_A	6e-18	1	91	87	166	NAC domain-containing protein 19
3swm_B	6e-18	1	91	87	166	NAC domain-containing protein 19
3swm_C	6e-18	1	91	87	166	NAC domain-containing protein 19
3swm_D	6e-18	1	91	87	166	NAC domain-containing protein 19
3swp_A	6e-18	1	91	87	166	NAC domain-containing protein 19
3swp_B	6e-18	1	91	87	166	NAC domain-containing protein 19
3swp_C	6e-18	1	91	87	166	NAC domain-containing protein 19
3swp_D	6e-18	1	91	87	166	NAC domain-containing protein 19
4dul_A	5e-18	1	91	84	163	NAC domain-containing protein 19
4dul_B	5e-18	1	91	84	163	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018720398.1	8e-81	PREDICTED: protein ATAF2-like
TrEMBL	A0A059D8U7	6e-80	A0A059D8U7_EUCGR; Uncharacterized protein
STRING	XP_010041964.1	1e-47	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM34711	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	8e-20	NAC domain containing protein 47