PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC066213.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 345aa MW: 39769.4 Da PI: 8.3348

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC066213.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.2e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak+ GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel EcC066213.10 59 EFYCSFAKQFGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKPSDDGKLQRNRKSSRCGCQAFMRIVKRAdfdIPEWRITGFSNIHNHELL 152 6*************999887455667****************9***************99887676689***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-9	275	323	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MSELTSVMKE TSDNNTDSSP NDFGTIEESP EETILSRQTS INLVPFIGQR FVSQDAAYEF 60 YCSFAKQFGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QIKPSDDGKL QRNRKSSRCG 120 CQAFMRIVKR ADFDIPEWRI TGFSNIHNHE LLKSNDVQLL PAYCTMSPDD KSRICMYAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLRSFRPVD RDNDAIDLLK MCKDKKDKDP 240 NFKYNFQLDA NNRLEYIAWS YASSIRSYEA FGDAVVFDTT HRLEAYDMIL GIWVGVDNHG 300 MNCFFGCVLL RDENVQSFSW ALKVGTYPIS RRLIPLWTIF LSLCY

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MSELTSVMKE TSDNNTDSSP NDFGTIEESP EETILSRQTS INLVPFIGQR FVSQDAAYEF  60
YCSFAKQFGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QIKPSDDGKL QRNRKSSRCG  120
CQAFMRIVKR ADFDIPEWRI TGFSNIHNHE LLKSNDVQLL PAYCTMSPDD KSRICMYAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLRSFRPVD RDNDAIDLLK MCKDKKDKDP  240
NFKYNFQLDA NNRLEYIAWS YASSIRSYEA FGDAVVFDTT HRLEAYDMIL GIWVGVDNHG  300
MNCFFGCVLL RDENVQSFSW ALKVGTYPIS RRLIPLWTIF LSLCY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010038262.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_010038263.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_018721209.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	1e-138	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A059A9P2	0.0	A0A059A9P2_EUCGR; Uncharacterized protein
STRING	XP_010038260.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-137	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]