PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC066484.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 75aa    MW: 8773.96 Da    PI: 11.3066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC066484.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-163374247
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                   y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++
  EcC066484.10 33 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPIAAARAYD 74
                  6******99.**********9...336******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-153374IPR016177DNA-binding domain
SMARTSM003802.2E-133375IPR001471AP2/ERF domain
PROSITE profilePS5103218.5843375IPR001471AP2/ERF domain
PRINTSPR003678.0E-93445IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-223475IPR001471AP2/ERF domain
PfamPF008474.8E-103474IPR001471AP2/ERF domain
CDDcd000181.10E-163474No hitNo description
PRINTSPR003678.0E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MEGEFFTATP TPTATGTTAE KRKQRQQQNR EKPYRGIRMR KWGKWVAEIR EPNKRSRIWL  60
GSYTTPIAAA RAYDT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022143655.17e-33ethylene-responsive transcription factor ERF011-like
SwissprotQ9SW633e-26RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A125R6G95e-31A0A125R6G9_BETPL; ERF11
TrEMBLA0A2N9H6F96e-31A0A2N9H6F9_FAGSY; Uncharacterized protein
STRINGPOPTR_0002s12550.12e-30(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.18e-25related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]