PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC066488.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ZF-HD
Protein Properties Length: 184aa    MW: 20118.5 Da    PI: 6.867
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC066488.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.5e-3284138358
   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                    v+YkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve
  EcC066488.10  84 VVKYKECLKNHAAAMGGTAMDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKEVE 138
                   689*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.5E-3085137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-3286137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.57687136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2289139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MELPSQDTDI PIPINSSFGG GHGGHLIHQP QQHDPSSAIA SHNNHINLPR IPSNGPPPQP  60
PPPPPPLEEP QPQHQHVMPY KKVVVKYKEC LKNHAAAMGG TAMDGCGEFM PSGEEGTIEA  120
LTCSACNCHR NFHRKEVEGG GDDHEHQWYN QTPSHNLMNK SGRKFILGHQ IHPKNVNVLG  180
GHEP
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065227.11e-132PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S01e-36ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A059B8L61e-130A0A059B8L6_EUCGR; Uncharacterized protein
STRINGXP_010065227.11e-131(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94428114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.27e-34homeobox protein 31