PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC068115.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 111aa    MW: 11604.3 Da    PI: 6.8567
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC068115.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.55e-071253439
      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                  + C+ ++   +  fC+ +  +lC  C    H g       H++
  EcC068115.10 12 KACDSCKTAAAAVFCRADAAFLCLGCDARVH-GaaklsarHER 53
                  67******99*****************9999.54777777775 PP
2zf-B_box284.6e-095398241
      zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                  + ++C+ +e+ ++   C+ +   lC +C   +H+       H++ p
  EcC068115.10 53 RVWVCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERAP 98
                  5689*****************************6678888888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-9956IPR000315B-box-type zinc finger
PROSITE profilePS5011910.21956IPR000315B-box-type zinc finger
PfamPF006431.7E-51153IPR000315B-box-type zinc finger
CDDcd000213.25E-51456No hitNo description
PROSITE profilePS5011910.6375299IPR000315B-box-type zinc finger
PfamPF006433.1E-75398IPR000315B-box-type zinc finger
CDDcd000212.52E-65599No hitNo description
SMARTSM003369.3E-105799IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MGFGGSWSVP AKACDSCKTA AAAVFCRADA AFLCLGCDAR VHGAAKLSAR HERVWVCEVC  60
EQAPAAVTCK ADAAALCVTC DADIHSANPL ARRHERAPVE PFLDAAESIS R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047014.19e-73PREDICTED: zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH89e-49COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A060VD563e-58A0A060VD56_FAGSY; Constans like (Fragment)
TrEMBLA0A2N9GQ067e-57A0A2N9GQ06_FAGSY; Uncharacterized protein
STRINGXP_010047014.13e-72(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.12e-43CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]