PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC069981.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 166aa    MW: 18149.2 Da    PI: 10.3289
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC069981.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.21.1e-2850144186
      trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   rWt+qe+l+Li+++r  e+r+rrg+           +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e + ++e++s +++ ++l+
  EcC069981.10  50 RWTRQEILVLIQGKRVAETRVRRGRvggsafgsgHVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWEARTRDETESFWVMRNDLR 144
                   8**********************9777778888799*******************************************9999999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-550115IPR009057Homeodomain-like
PROSITE profilePS500906.450116IPR017877Myb-like domain
PfamPF138371.8E-1350140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MATEQLSLGP AAAGDEAANG VEGRAAGDGL DDGGGGGGGG GGGRAPRLPR WTRQEILVLI  60
QGKRVAETRV RRGRVGGSAF GSGHVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDYK  120
KIKEWEARTR DETESFWVMR NDLRRERKLP GFFDREVYDI LDHQGS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044878.11e-115PREDICTED: trihelix transcription factor ASR3 isoform X2
RefseqXP_010044880.11e-116PREDICTED: trihelix transcription factor ASR3 isoform X3
RefseqXP_018724694.11e-115PREDICTED: trihelix transcription factor ASR3 isoform X1
SwissprotQ8VZ202e-75ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A059D9X71e-114A0A059D9X7_EUCGR; Uncharacterized protein
STRINGXP_010044878.11e-115(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.17e-72Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]