PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC070851.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 144aa    MW: 14604.3 Da    PI: 10.7638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC070851.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-202170255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +y+GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++ a++ ++g
  EcC070851.10 21 HYRGVRKRP-WGRYAAEIRDPKK---KSRVWLGTFDTAEEAARAYDSAARDFRG 70
                  7********.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.25E-302078No hitNo description
SuperFamilySSF541717.19E-232179IPR016177DNA-binding domain
PROSITE profilePS5103224.212178IPR001471AP2/ERF domain
SMARTSM003801.8E-392184IPR001471AP2/ERF domain
PfamPF008479.1E-142170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-332178IPR001471AP2/ERF domain
PRINTSPR003677.3E-122233IPR001471AP2/ERF domain
PRINTSPR003677.3E-124460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MAMKEKAGSG GGARLAVREA HYRGVRKRPW GRYAAEIRDP KKKSRVWLGT FDTAEEAARA  60
YDSAARDFRG SKAKTNFPLP SERPVLLLAG AAGGAGAGAG AGAGAGGGKG CNSRSPSQSS  120
TVESSGHDPA AAAAAAPMVD FSAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-232179564ATERF1
3gcc_A1e-232179564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057374.12e-66PREDICTED: ethylene-responsive transcription factor 4
SwissprotQ9LW493e-38ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLK7WJX17e-40K7WJX1_SOLTU; Ethylene-responsive element binding protein
STRINGXP_010057374.19e-66(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-28erf domain protein 9