PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC071450.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 118aa MW: 13895.5 Da PI: 7.5058

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC071450.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.2e-07	15	62	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +WT eE+e+++ v+ ++ W+ + ++ ++++ +++s+++++ EcC071450.10 15 SWTSEEQEKFAAIVRSNPPSqgkcFWDQMFKDFP-TKSRVELVSYYFNV 62 7***************88**********.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-4	12	62	IPR009057	Homeodomain-like
CDD	cd00167	3.35E-5	15	63	No hit	No description
Pfam	PF00249	9.5E-6	15	62	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005773	Cellular Component	vacuole
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
YVFNFDKMGE EVKHSWTSEE QEKFAAIVRS NPPSQGKCFW DQMFKDFPTK SRVELVSYYF 60 NVFLMLRRRN QNSCTPLNID SDDDEWEPGS VVRGVGHQEV RSSGSIFYSP TKPHSRYR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010053726.1	9e-82	PREDICTED: AT-rich interactive domain-containing protein 1
Refseq	XP_010053727.1	9e-82	PREDICTED: AT-rich interactive domain-containing protein 1
Refseq	XP_010053730.1	9e-82	PREDICTED: AT-rich interactive domain-containing protein 1
Refseq	XP_010053731.1	9e-82	PREDICTED: AT-rich interactive domain-containing protein 1
Swissprot	Q9LDD4	7e-22	ARID2_ARATH; AT-rich interactive domain-containing protein 2
TrEMBL	A0A059CI75	2e-80	A0A059CI75_EUCGR; Uncharacterized protein
STRING	XP_010053726.1	4e-81	(Eucalyptus grandis)

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]