PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC073440.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 136aa MW: 15337.3 Da PI: 8.2336

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC073440.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.5	5.4e-24	44	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF +r+ ++++s +g +C+k+g++ ++k ++ +++r++ r gCka++ vk+ek+gkw+vt+++++HnH+l+ EcC073440.10 44 KFYIDYARRVGFVIRIMQHRRSGIDG------RRCNKQGFSPNQKGSHGPDKKPRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 127 6*******************6666......57*********9**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-22	44	127	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
ILTVDLEEEA SENPVKGENG DQEENAISEP YVGMEFDSEE AAWKFYIDYA RRVGFVIRIM 60 QHRRSGIDGR RCNKQGFSPN QKGSHGPDKK PRPSAREGCK ATILVKMEKS GKWVVTRFVK 120 DHNHPLVVTA NGFGTM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010069579.1	2e-90	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	4e-22	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2N9HYE4	1e-65	A0A2N9HYE4_FAGSY; Uncharacterized protein
STRING	XP_010069579.1	9e-90	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	2e-42	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]